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DNA amplification and analysis

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A no-template control produces the expected band. What is the main concern?

  1. A working positive control makes the negative-control band irrelevant.
  2. The no-template control confirms that the band is target-specific.
  3. Contamination or a non-specific product must be investigated.
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Contamination or a non-specific product must be investigated.

A positive negative-control lane undermines the interpretation of sample bands.

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A PCR starts with 5 copies of a target. After 10 ideal cycles, about how many copies are there?

  1. About 50
  2. About 500
  3. About 100
  4. About 5,000
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About 5,000

5 x 2^10 = 5 x 1,024, which is about 5,000. Each ideal cycle doubles every copy.

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Where should DNA generally move from the wells?

  1. Towards the positive electrode
  2. Small fragments move positive and large fragments move negative.
  3. Towards the negative electrode because DNA is positive
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Towards the positive electrode

The phosphate backbone gives DNA a negative charge.

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Which statement about agarose gel electrophoresis of DNA is NOT correct?

  1. Longer fragments travel further from the wells
  2. A DNA ladder lets fragment sizes be estimated
  3. One band contains many DNA molecules
  4. DNA moves towards the positive electrode
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Longer fragments travel further from the wells

The gel slows longer fragments more, so shorter fragments travel further.

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Why wash the membrane after probe incubation?

  1. To separate every correctly paired probe from its target
  2. To amplify target DNA retained on the membrane
  3. To reduce background from unbound or unsuitable probe binding
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To reduce background from unbound or unsuitable probe binding

This makes the detected pattern more specific and interpretable.

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Write a short answer, then compare it with a sample and check for missing ideas.

Question 1 of 6

Interpret a contaminated assay

4 marks

A sample, positive control and no-template control all show a 400 bp PCR band. Explain why the sample result is not secure and propose a useful response. [4]

Start with what the negative control should show.

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